Journal of Agricultural Science and Technology ›› 2023, Vol. 25 ›› Issue (8): 33-52.DOI: 10.13304/j.nykjdb.2022.1087
• BIOTECHNOLOGY & LIFE SCIENCE • Previous Articles Next Articles
Boyang KE1(), Wenlong LI2, Caiying ZHANG1(
)
Received:
2022-12-12
Accepted:
2023-02-01
Online:
2023-08-20
Published:
2023-09-07
Contact:
Caiying ZHANG
通讯作者:
张彩英
作者简介:
柯博洋 E-mail:1990834185@qq.com;
基金资助:
CLC Number:
Boyang KE, Wenlong LI, Caiying ZHANG. Expressions of SWEET Genes During Pod and Seed Developments and Under Different Stress Conditions in Soybean[J]. Journal of Agricultural Science and Technology, 2023, 25(8): 33-52.
柯博洋, 李文龙, 张彩英. 大豆SWEET 基因在荚粒发育过程中与逆境胁迫下的表达[J]. 中国农业科技导报, 2023, 25(8): 33-52.
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URL: https://nkdb.magtechjournal.com/EN/10.13304/j.nykjdb.2022.1087
Soybase基因号a Gene ID in Soybase | 起始位置 Start position | 终止位置 End position | CDS长度 CDS length/bp | 蛋白长度Protein length/aa | 以往研究 基因名称b Gene name in previous study | Soybase基因号c Gene ID in Soybase |
---|---|---|---|---|---|---|
Glyma.12G234500 | 40 833 964 | 40 836 337 | 708 | 235 | GmSWEET29 | Glyma12G36300 |
Glyma.13G002700 | 811 844 | 814 553 | 774 | 257 | GmSWEET32 | Glyma13G10560 |
Glyma.13G037900 | 10 829 620 | 10 833 005 | 747 | 248 | GmSWEET31 | Glyma13G09140 |
Glyma.13G041300 | 12 351 382 | 12 354 214 | 768 | 255 | GmSWEET30 | Glyma13G08190 |
Glyma.13G169700 | 27 784 626 | 27 788 932 | 738 | 245 | GmSWEET33 | Glyma13G23860 |
Glyma.13G264400 | 36 140 787 | 36 144 014 | 708 | 235 | GmSWEET34 | Glyma13G33950 |
Glyma.14G120300 | 33 992 941 | 33 996 064 | 765 | 254 | GmSWEET36 | Glyma14G27610 |
Glyma.14G159900 | 37 588 876 | 37 591 423 | 783 | 260 | GmSWEET37 | Glyma14G30740 |
Glyma.14G160100 | 37 857 725 | 37 860 537 | 765 | 254 | GmSWEET38 | Glyma14G30940 |
Glyma.15G049200 | 3 861 273 | 3 863 135 | 750 | 249 | GmSWEET39 | Glyma15G05470 |
Glyma.15G149800 | 12 363 010 | 12 366 891 | 738 | 245 | GmSWEET40 | Glyma15G16030 |
Glyma.15G210400 | 33 183 156 | 33 190 881 | 672 | 223 | GmSWEET41 | Glyma15G27530 |
Glyma.15G211800 | 33 761 630 | 33 764 272 | 708 | 235 | GmSWEET42 | Glyma15G27750 |
Glyma.17G090800 | 7 074 090 | 7 076 820 | 681 | 226 | GmSWEET43 | Glyma17G09840 |
Glyma.18G295100 | 57 533 652 | 57 535 707 | 789 | 262 | GmSWEET44 | Glyma18G53250 |
Glyma.18G301100 | 58 162 823 | 58 164 693 | 807 | 268 | GmSWEET45 | Glyma18G53930 |
Glyma.18G301200 | 58 172 252 | 58 175 319 | 816 | 271 | GmSWEET46 | Glyma18G53940 |
Glyma.19G009800 | 912 713 | 917 261 | 741 | 246 | GmSWEET47 | Glyma19G01270 |
Glyma.19G009900 | 918 263 | 925 358 | 741 | 246 | GmSWEET48 | Glyma19G01280 |
Glyma.19G232200 | 48 770 032 | 48 773 696 | 924 | 307 | GmSWEET49 | Glyma19G42040 |
Glyma.20G066500 | 23 504 782 | 23 507 682 | 771 | 256 | GmSWEET51 | Glyma20G16160 |
Glyma.20G082700 | 31 085 642 | 31 087 512 | 543 | 180 | — | — |
Table 1 Information of 48 SWEET genes in cultivated soybean genome
Soybase基因号a Gene ID in Soybase | 起始位置 Start position | 终止位置 End position | CDS长度 CDS length/bp | 蛋白长度Protein length/aa | 以往研究 基因名称b Gene name in previous study | Soybase基因号c Gene ID in Soybase |
---|---|---|---|---|---|---|
Glyma.12G234500 | 40 833 964 | 40 836 337 | 708 | 235 | GmSWEET29 | Glyma12G36300 |
Glyma.13G002700 | 811 844 | 814 553 | 774 | 257 | GmSWEET32 | Glyma13G10560 |
Glyma.13G037900 | 10 829 620 | 10 833 005 | 747 | 248 | GmSWEET31 | Glyma13G09140 |
Glyma.13G041300 | 12 351 382 | 12 354 214 | 768 | 255 | GmSWEET30 | Glyma13G08190 |
Glyma.13G169700 | 27 784 626 | 27 788 932 | 738 | 245 | GmSWEET33 | Glyma13G23860 |
Glyma.13G264400 | 36 140 787 | 36 144 014 | 708 | 235 | GmSWEET34 | Glyma13G33950 |
Glyma.14G120300 | 33 992 941 | 33 996 064 | 765 | 254 | GmSWEET36 | Glyma14G27610 |
Glyma.14G159900 | 37 588 876 | 37 591 423 | 783 | 260 | GmSWEET37 | Glyma14G30740 |
Glyma.14G160100 | 37 857 725 | 37 860 537 | 765 | 254 | GmSWEET38 | Glyma14G30940 |
Glyma.15G049200 | 3 861 273 | 3 863 135 | 750 | 249 | GmSWEET39 | Glyma15G05470 |
Glyma.15G149800 | 12 363 010 | 12 366 891 | 738 | 245 | GmSWEET40 | Glyma15G16030 |
Glyma.15G210400 | 33 183 156 | 33 190 881 | 672 | 223 | GmSWEET41 | Glyma15G27530 |
Glyma.15G211800 | 33 761 630 | 33 764 272 | 708 | 235 | GmSWEET42 | Glyma15G27750 |
Glyma.17G090800 | 7 074 090 | 7 076 820 | 681 | 226 | GmSWEET43 | Glyma17G09840 |
Glyma.18G295100 | 57 533 652 | 57 535 707 | 789 | 262 | GmSWEET44 | Glyma18G53250 |
Glyma.18G301100 | 58 162 823 | 58 164 693 | 807 | 268 | GmSWEET45 | Glyma18G53930 |
Glyma.18G301200 | 58 172 252 | 58 175 319 | 816 | 271 | GmSWEET46 | Glyma18G53940 |
Glyma.19G009800 | 912 713 | 917 261 | 741 | 246 | GmSWEET47 | Glyma19G01270 |
Glyma.19G009900 | 918 263 | 925 358 | 741 | 246 | GmSWEET48 | Glyma19G01280 |
Glyma.19G232200 | 48 770 032 | 48 773 696 | 924 | 307 | GmSWEET49 | Glyma19G42040 |
Glyma.20G066500 | 23 504 782 | 23 507 682 | 771 | 256 | GmSWEET51 | Glyma20G16160 |
Glyma.20G082700 | 31 085 642 | 31 087 512 | 543 | 180 | — | — |
Soybase 基因号a Gene ID in Soybase | 起始位置 Start position | 终止位置 End position | CDS长度 CDS length/bp | 蛋白长度Protein length/aa | 以往研究 基因名称b Gene name in previous study | Soybase基因号c Gene ID in Soybase |
---|---|---|---|---|---|---|
Glyma.02G088400 | 7 718 092 | 7 719 984 | 789 | 262 | GmSWEET1 | Glyma02G09710 |
Glyma.03G065500 | 11 974 987 | 11 979 388 | 711 | 236 | — | — |
Glyma.03G209600 | 42 804 561 | 42 807 560 | 1 065 | 354 | GmSWEET2 | Glyma03G36790 |
Glyma.04G198400 | 45 886 443 | 45 889 300 | 777 | 258 | GmSWEET4 | Glyma04G37510 |
Glyma.04G198500 | 45 896 868 | 45 899 911 | 849 | 282 | GmSWEET5 | Glyma04G37520 |
Glyma.04G198600 | 45 908 432 | 45 910 736 | 951 | 316 | GmSWEET6 | Glyma04G37530 |
Glyma.04G238100 | 49 480 357 | 49 482 035 | 525 | 174 | GmSWEET7 | Glyma04G41680 |
Glyma.04G241400 | 49 764 845 | 49 768 113 | 744 | 247 | GmSWEET8 | Glyma04G42040 |
Glyma.05G036500 | 3 168 199 | 3 171 964 | 681 | 226 | GmSWEET9 | Glyma05G02070 |
Glyma.05G122200 | 31 617 834 | 31 620 408 | 852 | 283 | GmSWEET10 | Glyma05G25180 |
Glyma.05G202600 | 38 618 752 | 38 621 477 | 711 | 236 | — | — |
Glyma.05G202700 | 38 630 962 | 38 633 524 | 774 | 257 | GmSWEET11 | Glyma05G38340 |
Glyma.06G122200 | 9 927 550 | 9 932 286 | 777 | 258 | GmSWEET13 | Glyma06G12740 |
Glyma.06G125800 | 10 236 053 | 10 237 949 | 765 | 254 | GmSWEET14 | Glyma06G13110 |
Glyma.06G166800 | 13 866 485 | 13 868 782 | 930 | 309 | GmSWEET15 | Glyma06G17520 |
Glyma.06G166900 | 13 885 783 | 13 888 665 | 783 | 260 | GmSWEET16 | Glyma06G17530 |
Glyma.06G167000 | 13 899 833 | 13 902 581 | 777 | 258 | GmSWEET17 | Glyma06G17540 |
Glyma.06G200800 | 18 221 597 | 18 227 992 | 555 | 184 | — | — |
Glyma.08G009900 | 774 563 | 777 046 | 885 | 294 | GmSWEET20 | Glyma08G01300 |
Glyma.08G010000 | 784 374 | 787 011 | 765 | 254 | GmSWEET21 | Glyma08G01310 |
Glyma.08G025100 | 1 979 341 | 1 982 928 | 744 | 247 | GmSWEET22 | Glyma08G02890 |
Glyma.08G077200 | 5 873 073 | 5 875 662 | 825 | 274 | GmSWEET23 | Glyma08G08200 |
Glyma.08G183500 | 14 806 104 | 14 808 441 | 843 | 280 | GmSWEET24 | Glyma08G19580 |
Glyma.08G360400 | 46 604 757 | 46 607 236 | 819 | 272 | GmSWEET25 | Glyma08G47550 |
Glyma.08G360500 | 46 611 971 | 46 613 923 | 822 | 273 | — | — |
Glyma.09G043200 | 3 665 263 | 3 673 798 | 735 | 244 | GmSWEET28 | Glyma09G04840 |
Table 1 Information of 48 SWEET genes in cultivated soybean genome
Soybase 基因号a Gene ID in Soybase | 起始位置 Start position | 终止位置 End position | CDS长度 CDS length/bp | 蛋白长度Protein length/aa | 以往研究 基因名称b Gene name in previous study | Soybase基因号c Gene ID in Soybase |
---|---|---|---|---|---|---|
Glyma.02G088400 | 7 718 092 | 7 719 984 | 789 | 262 | GmSWEET1 | Glyma02G09710 |
Glyma.03G065500 | 11 974 987 | 11 979 388 | 711 | 236 | — | — |
Glyma.03G209600 | 42 804 561 | 42 807 560 | 1 065 | 354 | GmSWEET2 | Glyma03G36790 |
Glyma.04G198400 | 45 886 443 | 45 889 300 | 777 | 258 | GmSWEET4 | Glyma04G37510 |
Glyma.04G198500 | 45 896 868 | 45 899 911 | 849 | 282 | GmSWEET5 | Glyma04G37520 |
Glyma.04G198600 | 45 908 432 | 45 910 736 | 951 | 316 | GmSWEET6 | Glyma04G37530 |
Glyma.04G238100 | 49 480 357 | 49 482 035 | 525 | 174 | GmSWEET7 | Glyma04G41680 |
Glyma.04G241400 | 49 764 845 | 49 768 113 | 744 | 247 | GmSWEET8 | Glyma04G42040 |
Glyma.05G036500 | 3 168 199 | 3 171 964 | 681 | 226 | GmSWEET9 | Glyma05G02070 |
Glyma.05G122200 | 31 617 834 | 31 620 408 | 852 | 283 | GmSWEET10 | Glyma05G25180 |
Glyma.05G202600 | 38 618 752 | 38 621 477 | 711 | 236 | — | — |
Glyma.05G202700 | 38 630 962 | 38 633 524 | 774 | 257 | GmSWEET11 | Glyma05G38340 |
Glyma.06G122200 | 9 927 550 | 9 932 286 | 777 | 258 | GmSWEET13 | Glyma06G12740 |
Glyma.06G125800 | 10 236 053 | 10 237 949 | 765 | 254 | GmSWEET14 | Glyma06G13110 |
Glyma.06G166800 | 13 866 485 | 13 868 782 | 930 | 309 | GmSWEET15 | Glyma06G17520 |
Glyma.06G166900 | 13 885 783 | 13 888 665 | 783 | 260 | GmSWEET16 | Glyma06G17530 |
Glyma.06G167000 | 13 899 833 | 13 902 581 | 777 | 258 | GmSWEET17 | Glyma06G17540 |
Glyma.06G200800 | 18 221 597 | 18 227 992 | 555 | 184 | — | — |
Glyma.08G009900 | 774 563 | 777 046 | 885 | 294 | GmSWEET20 | Glyma08G01300 |
Glyma.08G010000 | 784 374 | 787 011 | 765 | 254 | GmSWEET21 | Glyma08G01310 |
Glyma.08G025100 | 1 979 341 | 1 982 928 | 744 | 247 | GmSWEET22 | Glyma08G02890 |
Glyma.08G077200 | 5 873 073 | 5 875 662 | 825 | 274 | GmSWEET23 | Glyma08G08200 |
Glyma.08G183500 | 14 806 104 | 14 808 441 | 843 | 280 | GmSWEET24 | Glyma08G19580 |
Glyma.08G360400 | 46 604 757 | 46 607 236 | 819 | 272 | GmSWEET25 | Glyma08G47550 |
Glyma.08G360500 | 46 611 971 | 46 613 923 | 822 | 273 | — | — |
Glyma.09G043200 | 3 665 263 | 3 673 798 | 735 | 244 | GmSWEET28 | Glyma09G04840 |
Soybase基因号 Gene ID in Soybase | 起始位置 Start position | 终止位置 End position | 编码区长度 Encoding region length/bp | 蛋白长度 Protein length/aa |
---|---|---|---|---|
Glyso.W05.02g003380 | 7 673 407 | 7 675 364 | 789 | 262 |
Glyso.W05.03g006296 | 12 036 308 | 12 047 109 | 981 | 326 |
Table 2 Information of 51 SWEET genes in wild soybean genome
Soybase基因号 Gene ID in Soybase | 起始位置 Start position | 终止位置 End position | 编码区长度 Encoding region length/bp | 蛋白长度 Protein length/aa |
---|---|---|---|---|
Glyso.W05.02g003380 | 7 673 407 | 7 675 364 | 789 | 262 |
Glyso.W05.03g006296 | 12 036 308 | 12 047 109 | 981 | 326 |
Soybase基因号 Gene ID in Soybase | 起始位置 Start position | 终止位置 End position | 编码区长度 Encoding region length/bp | 蛋白长度 Protein length/aa |
---|---|---|---|---|
Glyso.W05.03g007786 | 43 483 758 | 43 485 728 | 1 065 | 354 |
Glyso.W05.04g010276 | 46 663 345 | 46 666 196 | 777 | 258 |
Glyso.W05.04g010277 | 46 673 703 | 46 676 709 | 849 | 282 |
Glyso.W05.04g010278 | 46 685 202 | 46 687 351 | 951 | 316 |
Glyso.W05.04g010648 | 50 276 230 | 50 277 418 | 525 | 174 |
Glyso.W05.04g010679 | 50 556 688 | 50 565 022 | 744 | 247 |
Glyso.W05.05g011193 | 3 163 834 | 3 167 295 | 702 | 233 |
Glyso.W05.05g012088 | 33 484 789 | 33 487 327 | 852 | 283 |
Glyso.W05.05g012863 | 40 515 232 | 40 517 709 | 888 | 295 |
Glyso.W05.05g012864 | 40 527 179 | 40 529 765 | 774 | 257 |
Glyso.W05.06g014484 | 10 042 877 | 10 047 769 | 744 | 247 |
Glyso.W05.06g014520 | 10 349 792 | 10 351 809 | 765 | 254 |
Glyso.W05.06g014913 | 13 980 864 | 13 983 203 | 930 | 309 |
Glyso.W05.06g014914 | 14 000 327 | 14 003 213 | 783 | 260 |
Glyso.W05.06g014915 | 14 014 412 | 14 017 191 | 777 | 258 |
Glyso.W05.08g019272 | 786 619 | 789 128 | 885 | 294 |
Glyso.W05.08g019273 | 796 573 | 799 075 | 765 | 254 |
Glyso.W05.08g019421 | 1 989 104 | 1 992 705 | 744 | 247 |
Glyso.W05.08g019912 | 5 908 560 | 5 911 103 | 825 | 274 |
Glyso.W05.08g020934 | 14 817 339 | 14 819 722 | 843 | 280 |
Glyso.W05.08g022680 | 47 501 706 | 47 504 145 | 819 | 272 |
Glyso.W05.08g022681 | 47 508 969 | 47 510 852 | 822 | 273 |
Glyso.W05.09g023167 | 3 632 699 | 3 641 090 | 735 | 244 |
Glyso.W05.09g023919 | 26 973 647 | 26 974 159 | 417 | 138 |
Glyso.W05.11g030581 | 24 808 431 | 24 808 848 | 255 | 84 |
Glyso.W05.11g030961 | 36 013 282 | 36 017 219 | 738 | 245 |
Glyso.W05.11g031878 | 44 349 437 | 44 353 044 | 708 | 235 |
Glyso.W05.12g035305 | 43 852 265 | 43 855 848 | 708 | 235 |
Glyso.W05.13g035416 | 773 032 | 775 298 | 774 | 257 |
Glyso.W05.13g035646 | 11 739 631 | 11 743 028 | 747 | 248 |
Glyso.W05.13g035684 | 13 262 074 | 13 265 093 | 768 | 255 |
Glyso.W05.14g038816 | 34 653 572 | 34 656 886 | 750 | 249 |
Glyso.W05.14g038879 | 38 662 759 | 38 664 694 | 858 | 285 |
Glyso.W05.14g038881 | 38 928 839 | 38 931 799 | 765 | 254 |
Glyso.W05.15g040012 | 3 865 965 | 3 867 423 | 807 | 268 |
Table 2 Information of 51 SWEET genes in wild soybean genome
Soybase基因号 Gene ID in Soybase | 起始位置 Start position | 终止位置 End position | 编码区长度 Encoding region length/bp | 蛋白长度 Protein length/aa |
---|---|---|---|---|
Glyso.W05.03g007786 | 43 483 758 | 43 485 728 | 1 065 | 354 |
Glyso.W05.04g010276 | 46 663 345 | 46 666 196 | 777 | 258 |
Glyso.W05.04g010277 | 46 673 703 | 46 676 709 | 849 | 282 |
Glyso.W05.04g010278 | 46 685 202 | 46 687 351 | 951 | 316 |
Glyso.W05.04g010648 | 50 276 230 | 50 277 418 | 525 | 174 |
Glyso.W05.04g010679 | 50 556 688 | 50 565 022 | 744 | 247 |
Glyso.W05.05g011193 | 3 163 834 | 3 167 295 | 702 | 233 |
Glyso.W05.05g012088 | 33 484 789 | 33 487 327 | 852 | 283 |
Glyso.W05.05g012863 | 40 515 232 | 40 517 709 | 888 | 295 |
Glyso.W05.05g012864 | 40 527 179 | 40 529 765 | 774 | 257 |
Glyso.W05.06g014484 | 10 042 877 | 10 047 769 | 744 | 247 |
Glyso.W05.06g014520 | 10 349 792 | 10 351 809 | 765 | 254 |
Glyso.W05.06g014913 | 13 980 864 | 13 983 203 | 930 | 309 |
Glyso.W05.06g014914 | 14 000 327 | 14 003 213 | 783 | 260 |
Glyso.W05.06g014915 | 14 014 412 | 14 017 191 | 777 | 258 |
Glyso.W05.08g019272 | 786 619 | 789 128 | 885 | 294 |
Glyso.W05.08g019273 | 796 573 | 799 075 | 765 | 254 |
Glyso.W05.08g019421 | 1 989 104 | 1 992 705 | 744 | 247 |
Glyso.W05.08g019912 | 5 908 560 | 5 911 103 | 825 | 274 |
Glyso.W05.08g020934 | 14 817 339 | 14 819 722 | 843 | 280 |
Glyso.W05.08g022680 | 47 501 706 | 47 504 145 | 819 | 272 |
Glyso.W05.08g022681 | 47 508 969 | 47 510 852 | 822 | 273 |
Glyso.W05.09g023167 | 3 632 699 | 3 641 090 | 735 | 244 |
Glyso.W05.09g023919 | 26 973 647 | 26 974 159 | 417 | 138 |
Glyso.W05.11g030581 | 24 808 431 | 24 808 848 | 255 | 84 |
Glyso.W05.11g030961 | 36 013 282 | 36 017 219 | 738 | 245 |
Glyso.W05.11g031878 | 44 349 437 | 44 353 044 | 708 | 235 |
Glyso.W05.12g035305 | 43 852 265 | 43 855 848 | 708 | 235 |
Glyso.W05.13g035416 | 773 032 | 775 298 | 774 | 257 |
Glyso.W05.13g035646 | 11 739 631 | 11 743 028 | 747 | 248 |
Glyso.W05.13g035684 | 13 262 074 | 13 265 093 | 768 | 255 |
Glyso.W05.14g038816 | 34 653 572 | 34 656 886 | 750 | 249 |
Glyso.W05.14g038879 | 38 662 759 | 38 664 694 | 858 | 285 |
Glyso.W05.14g038881 | 38 928 839 | 38 931 799 | 765 | 254 |
Glyso.W05.15g040012 | 3 865 965 | 3 867 423 | 807 | 268 |
Soybase基因号 Gene ID in Soybase | 起始位置 Start position | 终止位置 End position | 编码区长度 Encoding region length/bp | 蛋白长度 Protein length/aa |
---|---|---|---|---|
Glyso.W05.15g040984 | 12 442 229 | 12 445 744 | 738 | 245 |
Glyso.W05.15g041610 | 32 978 160 | 32 979 604 | 618 | 205 |
Glyso.W05.15g041623 | 33 538 828 | 33 544 196 | 1 092 | 363 |
Glyso.W05.17g045336 | 7 092 772 | 7 095 023 | 681 | 226 |
Glyso.W05.18g049967 | 56 985 156 | 56 986 724 | 789 | 262 |
Glyso.W05.18g050022 | 57 610 226 | 57 612 091 | 807 | 268 |
Glyso.W05.18g050023 | 57 619 790 | 57 623 903 | 900 | 299 |
Glyso.W05.19g050127 | 941 294 | 944 334 | 741 | 246 |
Glyso.W05.19g050128 | 946 534 | 961 218 | 1 179 | 392 |
Glyso.W05.19g050738 | 20 533 127 | 20 537 985 | 900 | 299 |
Glyso.W05.19g052382 | 48 234 860 | 48 238 244 | 924 | 307 |
Glyso.W05.20g053352 | 25 826 464 | 25 829 017 | 771 | 256 |
Glyso.W05.20g053543 | 34 196 978 | 34 198 780 | 543 | 180 |
Glyso.W05.u055442 | 1 159 815 | 1 161 098 | 546 | 181 |
Table 2 Information of 51 SWEET genes in wild soybean genome
Soybase基因号 Gene ID in Soybase | 起始位置 Start position | 终止位置 End position | 编码区长度 Encoding region length/bp | 蛋白长度 Protein length/aa |
---|---|---|---|---|
Glyso.W05.15g040984 | 12 442 229 | 12 445 744 | 738 | 245 |
Glyso.W05.15g041610 | 32 978 160 | 32 979 604 | 618 | 205 |
Glyso.W05.15g041623 | 33 538 828 | 33 544 196 | 1 092 | 363 |
Glyso.W05.17g045336 | 7 092 772 | 7 095 023 | 681 | 226 |
Glyso.W05.18g049967 | 56 985 156 | 56 986 724 | 789 | 262 |
Glyso.W05.18g050022 | 57 610 226 | 57 612 091 | 807 | 268 |
Glyso.W05.18g050023 | 57 619 790 | 57 623 903 | 900 | 299 |
Glyso.W05.19g050127 | 941 294 | 944 334 | 741 | 246 |
Glyso.W05.19g050128 | 946 534 | 961 218 | 1 179 | 392 |
Glyso.W05.19g050738 | 20 533 127 | 20 537 985 | 900 | 299 |
Glyso.W05.19g052382 | 48 234 860 | 48 238 244 | 924 | 307 |
Glyso.W05.20g053352 | 25 826 464 | 25 829 017 | 771 | 256 |
Glyso.W05.20g053543 | 34 196 978 | 34 198 780 | 543 | 180 |
Glyso.W05.u055442 | 1 159 815 | 1 161 098 | 546 | 181 |
Fig. 1 Phylogenetic tree of SWEET genes in cultivated and wild soybeansNote:Red indicates the SWEET genes in cultivated soybean, blue indicates the SWEET genes in wild soybean.
Fig. 2 Expressions of SWEET genes in different soybean pod developmental stagesNote:Different colors indicate gene expression levels. KN7-PT1~KN7-PT5 indicate pod differential development stages of ‘KN7’; C813-PT1~C813-PT5 indicate pod differential development stages of ‘C813’.
Fig. 3 Expressions of SWEET genes in different soybean seed developmental stagesNote:Different colors indicated gene expression levels.Z-ST1~Z-ST5 indicate seed differential development stages of ‘Z92116’;Q-ST1~Q-ST5 indicate seed differential development stages of ‘QH30’.
Fig. 4 Expressions of SWEET genes in soybean leaves at different time-points after SMV inoculationNote:Different colors indicated gene expression levels. Q-0 h~Q-336 h indicate different time-points in ‘QH30’; Z-0 h~Z-336 h indicate different time-points in ‘Z92116’.
Fig. 5 Expressions of SWEET genes in soybean roots at different time-points after low phosphorus stressNote:Different colors indicate gene expression levels. Z-0 d~Z-70 d indicate different time-points in ‘ZH15’; N-0 d~N-70 d indicate different time-points in ‘NMH’.
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
Glyma.02G088400 | 6 | C | A | M | I | 211 | 是Yes |
A | G | V | A | 131 | 否No | ||
T | C | T | A | 117 | 否No | ||
G | A | S | L | 85 | 是Yes | ||
C | G | G | R | 79 | 是Yes | ||
A | T | N | K | 68 | 是Yes | ||
Glyma.03G065500 | 10 | G | A/C | Y | Y/* | 223 | 否No |
T | C | I | V | 214 | 否No | ||
C | A | K | N | 204 | 是Yes | ||
C | T | G | R | 165 | 是Yes | ||
C | A/T | S | I/N | 164 | 是Yes | ||
G | A | R | * | 161 | 是Yes | ||
A | G | W | R | 74 | 否No | ||
A | T | C | S | 14 | 否No | ||
C | T | G | S | 11 | 否No | ||
C | T | E | K | 9 | 否No | ||
Glyma.03G209600 | 3 | A | C | I | S | 311 | 否No |
C | T | V | I | 179 | 是Yes | ||
A | G | L | S | 169 | 否No |
Table 3 Nonsynonymous SNP of cultivated soybean SWEET genes
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
Glyma.02G088400 | 6 | C | A | M | I | 211 | 是Yes |
A | G | V | A | 131 | 否No | ||
T | C | T | A | 117 | 否No | ||
G | A | S | L | 85 | 是Yes | ||
C | G | G | R | 79 | 是Yes | ||
A | T | N | K | 68 | 是Yes | ||
Glyma.03G065500 | 10 | G | A/C | Y | Y/* | 223 | 否No |
T | C | I | V | 214 | 否No | ||
C | A | K | N | 204 | 是Yes | ||
C | T | G | R | 165 | 是Yes | ||
C | A/T | S | I/N | 164 | 是Yes | ||
G | A | R | * | 161 | 是Yes | ||
A | G | W | R | 74 | 否No | ||
A | T | C | S | 14 | 否No | ||
C | T | G | S | 11 | 否No | ||
C | T | E | K | 9 | 否No | ||
Glyma.03G209600 | 3 | A | C | I | S | 311 | 否No |
C | T | V | I | 179 | 是Yes | ||
A | G | L | S | 169 | 否No |
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
Glyma.04G198400 | 2 | A | G | V | A | 208 | 是Yes |
T | C | K | E | 65 | 是Yes | ||
Glyma.04G198500 | 6 | G | C | F | L | 171 | 是Yes |
A | C | I | S | 85 | 是Yes | ||
T | C | T | A | 84 | 是Yes | ||
A | C | Y | D | 60 | 是Yes | ||
C | T | M | I | 56 | 是Yes | ||
G | T | L | I | 46 | 是Yes | ||
Glyma.04G198600 | 5 | G | T | Q | K | 245 | 否No |
G | A | T | I | 231 | 否No | ||
G | A | P | L | 187 | 是Yes | ||
A | G | V | A | 100 | 否No | ||
C | T | A | T | 96 | 是Yes | ||
Glyma.04G238100 | 2 | C | T | V | I | 119 | 否No |
G | T | P | T | 108 | 否No | ||
Glyma.04G241400 | 3 | C | T | T | M | 201 | 是Yes |
G | A | G | R | 217 | 否No | ||
A | G | Q | R | 235 | 否No | ||
Glyma.05G036500 | 3 | G | C | G | A | 108 | 否No |
G | A | V | I | 111 | 否No | ||
G | T | A | S | 175 | 是Yes | ||
Glyma.05G122200 | 5 | A | G | I | V | 90 | 是Yes |
A | G | I | V | 192 | 是Yes | ||
A | C | K | Q | 219 | 是Yes | ||
C | A | L | I | 233 | 否No | ||
G | C | V | L | 239 | 否No | ||
Glyma.05G202600 | 5 | G | A | G | D | 12 | 是Yes |
A | G | N | D | 174 | 否No | ||
C | G | S | R | 183 | 否No | ||
A | T | Q | L | 210 | 否No | ||
G | C | R | T | 234 | 否No | ||
Glyma.05G202700 | 1 | G | A | A | T | 216 | 否No |
Glyma.06G125800 | 5 | G | A | M | I | 171 | 是Yes |
A | G | S | G | 196 | 是Yes | ||
T | A | D | E | 221 | 否No | ||
A | C | E | D | 236 | 否No |
Table 3 Nonsynonymous SNP of cultivated soybean SWEET genes
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
Glyma.04G198400 | 2 | A | G | V | A | 208 | 是Yes |
T | C | K | E | 65 | 是Yes | ||
Glyma.04G198500 | 6 | G | C | F | L | 171 | 是Yes |
A | C | I | S | 85 | 是Yes | ||
T | C | T | A | 84 | 是Yes | ||
A | C | Y | D | 60 | 是Yes | ||
C | T | M | I | 56 | 是Yes | ||
G | T | L | I | 46 | 是Yes | ||
Glyma.04G198600 | 5 | G | T | Q | K | 245 | 否No |
G | A | T | I | 231 | 否No | ||
G | A | P | L | 187 | 是Yes | ||
A | G | V | A | 100 | 否No | ||
C | T | A | T | 96 | 是Yes | ||
Glyma.04G238100 | 2 | C | T | V | I | 119 | 否No |
G | T | P | T | 108 | 否No | ||
Glyma.04G241400 | 3 | C | T | T | M | 201 | 是Yes |
G | A | G | R | 217 | 否No | ||
A | G | Q | R | 235 | 否No | ||
Glyma.05G036500 | 3 | G | C | G | A | 108 | 否No |
G | A | V | I | 111 | 否No | ||
G | T | A | S | 175 | 是Yes | ||
Glyma.05G122200 | 5 | A | G | I | V | 90 | 是Yes |
A | G | I | V | 192 | 是Yes | ||
A | C | K | Q | 219 | 是Yes | ||
C | A | L | I | 233 | 否No | ||
G | C | V | L | 239 | 否No | ||
Glyma.05G202600 | 5 | G | A | G | D | 12 | 是Yes |
A | G | N | D | 174 | 否No | ||
C | G | S | R | 183 | 否No | ||
A | T | Q | L | 210 | 否No | ||
G | C | R | T | 234 | 否No | ||
Glyma.05G202700 | 1 | G | A | A | T | 216 | 否No |
Glyma.06G125800 | 5 | G | A | M | I | 171 | 是Yes |
A | G | S | G | 196 | 是Yes | ||
T | A | D | E | 221 | 否No | ||
A | C | E | D | 236 | 否No |
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
C | A | H | N | 253 | 否No | ||
Glyma.06G166800 | 4 | G | T | G | V | 240 | 否No |
G | C | E | Q | 247 | 否No | ||
A | G | E | G | 257 | 否No | ||
G | C | K | N | 291 | 否No | ||
Glyma.06G166900 | 2 | T | G | V | G | 208 | 是Yes |
C | G | L | V | 249 | 否No | ||
Glyma.06G167000 | 1 | C | A | P | Q | 224 | 否No |
Glyma.06G200800 | 29 | G | A/T | F | F/L | 179 | 否No |
C | T | V | I | 177 | 否No | ||
C | A | W | L | 170 | 否No | ||
G | T | L | M | 162 | 否No | ||
A | C | C | G | 147 | 否No | ||
A | C | V | G | 141 | 否No | ||
T | C | H | R | 137 | 否No | ||
C | G | R | T | 134 | 否No | ||
G | A | Q | * | 122 | 否No | ||
G | A | A | V | 113 | 否No | ||
C | T | V | I | 112 | 否No | ||
G | A | A | V | 102 | 否No | ||
C | G | V | L | 99 | 否No | ||
G | A | T | I | 98 | 否No | ||
A | G | V | A | 71 | 是Yes | ||
G | A/T | T | I/N | 70 | 是Yes | ||
C | T | V | M | 68 | 是Yes | ||
T | C | K | E | 62 | 是Yes | ||
C | T | W | * | 55 | 是Yes | ||
G | A | S | F | 53 | 是Yes | ||
A | G/T | C | C/* | 52 | 是Yes | ||
C | G | S | T | 42 | 是Yes | ||
G | A | T | M | 37 | 是Yes | ||
G | A | S | F | 36 | 是Yes | ||
C | T | G | R | 35 | 是Yes | ||
C | G | K | N | 33 | 是Yes | ||
T | C | I | V | 25 | 是Yes |
Table 3 Nonsynonymous SNP of cultivated soybean SWEET genes
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
C | A | H | N | 253 | 否No | ||
Glyma.06G166800 | 4 | G | T | G | V | 240 | 否No |
G | C | E | Q | 247 | 否No | ||
A | G | E | G | 257 | 否No | ||
G | C | K | N | 291 | 否No | ||
Glyma.06G166900 | 2 | T | G | V | G | 208 | 是Yes |
C | G | L | V | 249 | 否No | ||
Glyma.06G167000 | 1 | C | A | P | Q | 224 | 否No |
Glyma.06G200800 | 29 | G | A/T | F | F/L | 179 | 否No |
C | T | V | I | 177 | 否No | ||
C | A | W | L | 170 | 否No | ||
G | T | L | M | 162 | 否No | ||
A | C | C | G | 147 | 否No | ||
A | C | V | G | 141 | 否No | ||
T | C | H | R | 137 | 否No | ||
C | G | R | T | 134 | 否No | ||
G | A | Q | * | 122 | 否No | ||
G | A | A | V | 113 | 否No | ||
C | T | V | I | 112 | 否No | ||
G | A | A | V | 102 | 否No | ||
C | G | V | L | 99 | 否No | ||
G | A | T | I | 98 | 否No | ||
A | G | V | A | 71 | 是Yes | ||
G | A/T | T | I/N | 70 | 是Yes | ||
C | T | V | M | 68 | 是Yes | ||
T | C | K | E | 62 | 是Yes | ||
C | T | W | * | 55 | 是Yes | ||
G | A | S | F | 53 | 是Yes | ||
A | G/T | C | C/* | 52 | 是Yes | ||
C | G | S | T | 42 | 是Yes | ||
G | A | T | M | 37 | 是Yes | ||
G | A | S | F | 36 | 是Yes | ||
C | T | G | R | 35 | 是Yes | ||
C | G | K | N | 33 | 是Yes | ||
T | C | I | V | 25 | 是Yes |
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
T | A | R | * | 10 | 是Yes | ||
G | C | F | L | 6 | 是Yes | ||
Glyma.08G009900 | 3 | T | C | Y | H | 60 | 是Yes |
C | T | P | S | 224 | 否No | ||
A | C | Q | P | 273 | 否No | ||
Glyma.08G077200 | 6 | A | C | K | Q | 161 | 是Yes |
A | G | N | D | 162 | 是Yes | ||
G | T | A | S | 194 | 是Yes | ||
G | A | R | K | 215 | 是Yes | ||
A | G | T | A | 219 | 是Yes | ||
A | C | K | N | 230 | 否No | ||
Glyma.08G183500 | 15 | T | A | Y | N | 90 | 是Yes |
C | T | A | V | 94 | 是Yes | ||
C | T | L | F | 118 | 否No | ||
G | A | R | H | 121 | 否No | ||
G | T | K | N | 159 | 是Yes | ||
T | A | F | I | 170 | 是Yes | ||
A | G | I | M | 177 | 是Yes | ||
C | T | T | M | 178 | 是Yes | ||
T | C | W | R | 179 | 是Yes | ||
T | C | V | A | 181 | 是Yes | ||
G | T | L | F | 184 | 是Yes | ||
C | T | S | F | 185 | 是Yes | ||
C | T | Q | * | 205 | 是Yes | ||
G | A | R | K | 213 | 是Yes | ||
T | C | V | A | 228 | 否No | ||
Glyma.08G360400 | 2 | T | C | V | A | 2 | 否No |
C | A | N | K | 222 | 否No | ||
Glyma.08G360500 | 4 | T | C | L | P | 229 | 否No |
G | A | V | I | 235 | 否No | ||
A | G | E | G | 247 | 否No | ||
G | A | S | N | 257 | 否No | ||
Glyma.09G043200 | 6 | A | C | K | Q | 29 | 是Yes |
A | T | R | W | 96 | 否No |
Table 3 Nonsynonymous SNP of cultivated soybean SWEET genes
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
T | A | R | * | 10 | 是Yes | ||
G | C | F | L | 6 | 是Yes | ||
Glyma.08G009900 | 3 | T | C | Y | H | 60 | 是Yes |
C | T | P | S | 224 | 否No | ||
A | C | Q | P | 273 | 否No | ||
Glyma.08G077200 | 6 | A | C | K | Q | 161 | 是Yes |
A | G | N | D | 162 | 是Yes | ||
G | T | A | S | 194 | 是Yes | ||
G | A | R | K | 215 | 是Yes | ||
A | G | T | A | 219 | 是Yes | ||
A | C | K | N | 230 | 否No | ||
Glyma.08G183500 | 15 | T | A | Y | N | 90 | 是Yes |
C | T | A | V | 94 | 是Yes | ||
C | T | L | F | 118 | 否No | ||
G | A | R | H | 121 | 否No | ||
G | T | K | N | 159 | 是Yes | ||
T | A | F | I | 170 | 是Yes | ||
A | G | I | M | 177 | 是Yes | ||
C | T | T | M | 178 | 是Yes | ||
T | C | W | R | 179 | 是Yes | ||
T | C | V | A | 181 | 是Yes | ||
G | T | L | F | 184 | 是Yes | ||
C | T | S | F | 185 | 是Yes | ||
C | T | Q | * | 205 | 是Yes | ||
G | A | R | K | 213 | 是Yes | ||
T | C | V | A | 228 | 否No | ||
Glyma.08G360400 | 2 | T | C | V | A | 2 | 否No |
C | A | N | K | 222 | 否No | ||
Glyma.08G360500 | 4 | T | C | L | P | 229 | 否No |
G | A | V | I | 235 | 否No | ||
A | G | E | G | 247 | 否No | ||
G | A | S | N | 257 | 否No | ||
Glyma.09G043200 | 6 | A | C | K | Q | 29 | 是Yes |
A | T | R | W | 96 | 否No |
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
C | T | A | V | 101 | 否No | ||
A | T | I | L | 113 | 否No | ||
G | A | R | H | 213 | 是Yes | ||
C | T | L | F | 228 | 否No | ||
Glyma.12G234500 | 5 | C | A | P | H | 34 | 是Yes |
A | G | T | A | 79 | 是Yes | ||
C | T | A | V | 120 | 否No | ||
T | A | L | I | 190 | 是Yes | ||
C | A | F | L | 216 | 是Yes | ||
Glyma.13G002700 | 6 | G | A | G | S | 20 | 是Yes |
T | A | L | M | 51 | 是Yes | ||
C | T | P | L | 67 | 是Yes | ||
A | G | I | V | 143 | 是Yes | ||
G | A | D | N | 189 | 是Yes | ||
T | C | V | A | 236 | 否No | ||
Glyma.13G037900 | 4 | T | A | T | S | 231 | 否No |
C | A | V | L | 190 | 是Yes | ||
G | A | A | V | 120 | 否No | ||
G | A | S | F | 35 | 是Yes | ||
Glyma.13G041300 | 1 | A | G | I | V | 137 | 是Yes |
Glyma.13G169700 | 7 | A | T | N | K | 240 | 否No |
G | A | L | F | 236 | 否No | ||
A | C/G | D | E/D | 222 | 否No | ||
G | A | A | V | 201 | 是Yes | ||
C | T | V | I | 116 | 否No | ||
T | A | L | F | 71 | 是Yes | ||
T | A | N | Y | 68 | 是Yes | ||
Glyma.13G264400 | 4 | C | T | E | K | 219 | 是Yes |
G | A | P | S | 200 | 是Yes | ||
T | G | L | F | 123 | 否No | ||
A | G | V | A | 19 | 是Yes | ||
Glyma.14G120300 | 1 | A | G | * | Q | 255 | 否No |
Glyma.14G159900 | 1 | C | A | V | L | 225 | 否No |
Glyma.14G160100 | 2 | T | C | I | V | 118 | 否No |
Table 3 Nonsynonymous SNP of cultivated soybean SWEET genes
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
C | T | A | V | 101 | 否No | ||
A | T | I | L | 113 | 否No | ||
G | A | R | H | 213 | 是Yes | ||
C | T | L | F | 228 | 否No | ||
Glyma.12G234500 | 5 | C | A | P | H | 34 | 是Yes |
A | G | T | A | 79 | 是Yes | ||
C | T | A | V | 120 | 否No | ||
T | A | L | I | 190 | 是Yes | ||
C | A | F | L | 216 | 是Yes | ||
Glyma.13G002700 | 6 | G | A | G | S | 20 | 是Yes |
T | A | L | M | 51 | 是Yes | ||
C | T | P | L | 67 | 是Yes | ||
A | G | I | V | 143 | 是Yes | ||
G | A | D | N | 189 | 是Yes | ||
T | C | V | A | 236 | 否No | ||
Glyma.13G037900 | 4 | T | A | T | S | 231 | 否No |
C | A | V | L | 190 | 是Yes | ||
G | A | A | V | 120 | 否No | ||
G | A | S | F | 35 | 是Yes | ||
Glyma.13G041300 | 1 | A | G | I | V | 137 | 是Yes |
Glyma.13G169700 | 7 | A | T | N | K | 240 | 否No |
G | A | L | F | 236 | 否No | ||
A | C/G | D | E/D | 222 | 否No | ||
G | A | A | V | 201 | 是Yes | ||
C | T | V | I | 116 | 否No | ||
T | A | L | F | 71 | 是Yes | ||
T | A | N | Y | 68 | 是Yes | ||
Glyma.13G264400 | 4 | C | T | E | K | 219 | 是Yes |
G | A | P | S | 200 | 是Yes | ||
T | G | L | F | 123 | 否No | ||
A | G | V | A | 19 | 是Yes | ||
Glyma.14G120300 | 1 | A | G | * | Q | 255 | 否No |
Glyma.14G159900 | 1 | C | A | V | L | 225 | 否No |
Glyma.14G160100 | 2 | T | C | I | V | 118 | 否No |
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
G | A | L | F | 53 | 是Yes | ||
Glyma.15G049200 | 5 | T | A | R | S | 246 | 否No |
A | G | V | A | 232 | 否No | ||
G | A | A | V | 228 | 否No | ||
C | G | G | R | 215 | 否No | ||
C | G | A | P | 8 | 否No | ||
Glyma.15G149800 | 12 | C | T | R | K | 243 | 否No |
G | A | A | V | 128 | 是Yes | ||
A | G | I | T | 115 | 否No | ||
C | T | V | I | 114 | 否No | ||
C | T | A | T | 112 | 否No | ||
G | A | A | V | 98 | 否No | ||
C | T | R | K | 96 | 否No | ||
C | A | G | V | 95 | 否No | ||
C | T | G | S | 95 | 否No | ||
G | A/C | N | N/K | 61 | 是Yes | ||
G | A | T | I | 36 | 是Yes | ||
G | A | P | L | 25 | 是Yes | ||
Glyma.15G210400 | 11 | C | T | A | V | 4 | 否No |
A | T | N | I | 5 | 否No | ||
C | A | P | Q | 9 | 否No | ||
C | T | T | I | 12 | 否No | ||
G | A | W | * | 15 | 否No | ||
T | A | M | K | 19 | 否No | ||
T | G | V | G | 70 | 是Yes | ||
C | T | L | F | 111 | 是Yes | ||
T | C | F | S | 129 | 是Yes | ||
C | T | P | L | 159 | 是Yes | ||
C | T | T | I | 166 | 是Yes | ||
Glyma.15G211800 | 2 | G | C | Y | * | 238 | 否No |
A | T | F | L | 142 | 是Yes | ||
Glyma.18G295100 | 5 | A | G | I | V | 120 | 否No |
C | T | T | I | 121 | 否No | ||
A | G | K | E | 188 | 是Yes |
Table 3 Nonsynonymous SNP of cultivated soybean SWEET genes
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
G | A | L | F | 53 | 是Yes | ||
Glyma.15G049200 | 5 | T | A | R | S | 246 | 否No |
A | G | V | A | 232 | 否No | ||
G | A | A | V | 228 | 否No | ||
C | G | G | R | 215 | 否No | ||
C | G | A | P | 8 | 否No | ||
Glyma.15G149800 | 12 | C | T | R | K | 243 | 否No |
G | A | A | V | 128 | 是Yes | ||
A | G | I | T | 115 | 否No | ||
C | T | V | I | 114 | 否No | ||
C | T | A | T | 112 | 否No | ||
G | A | A | V | 98 | 否No | ||
C | T | R | K | 96 | 否No | ||
C | A | G | V | 95 | 否No | ||
C | T | G | S | 95 | 否No | ||
G | A/C | N | N/K | 61 | 是Yes | ||
G | A | T | I | 36 | 是Yes | ||
G | A | P | L | 25 | 是Yes | ||
Glyma.15G210400 | 11 | C | T | A | V | 4 | 否No |
A | T | N | I | 5 | 否No | ||
C | A | P | Q | 9 | 否No | ||
C | T | T | I | 12 | 否No | ||
G | A | W | * | 15 | 否No | ||
T | A | M | K | 19 | 否No | ||
T | G | V | G | 70 | 是Yes | ||
C | T | L | F | 111 | 是Yes | ||
T | C | F | S | 129 | 是Yes | ||
C | T | P | L | 159 | 是Yes | ||
C | T | T | I | 166 | 是Yes | ||
Glyma.15G211800 | 2 | G | C | Y | * | 238 | 否No |
A | T | F | L | 142 | 是Yes | ||
Glyma.18G295100 | 5 | A | G | I | V | 120 | 否No |
C | T | T | I | 121 | 否No | ||
A | G | K | E | 188 | 是Yes |
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
A | T | N | I | 235 | 否No | ||
T | C | S | P | 249 | 否No | ||
Glyma.18G301200 | 3 | C | A | C | F | 269 | 否No |
T | A | E | D | 223 | 否No | ||
T | A | H | L | 6 | 否No | ||
Glyma.19G009800 | 2 | G | A | L | F | 107 | 否No |
A | C | F | L | 20 | 是Yes | ||
Glyma.19G009900 | 1 | C | G | K | N | 218 | 是Yes |
Glyma.19G232200 | 1 | A | T | K | * | 37 | 是Yes |
Glyma.20G066500 | 1 | C | T | W | * | 34 | 是Yes |
Glyma.20G082700 | 18 | C | T | G | R | 178 | 否No |
C | T | E | K | 167 | 否No | ||
T | C | R | G | 162 | 否No | ||
C | T | V | I | 161 | 否No | ||
C | T | G | D | 157 | 否No | ||
G | A | L | F | 146 | 否No | ||
G | A | P | L | 145 | 否No | ||
C | A/T | A | S/T | 120 | 否No | ||
G | C | Q | E | 118 | 否No | ||
G | A | A | V | 111 | 否No | ||
A | G | V | A | 107 | 否No | ||
C | A | A | S | 90 | 是Yes | ||
C | T | W | * | 55 | 是Yes | ||
C | T | G | R | 35 | 是Yes | ||
A | G | F | L | 28 | 是Yes | ||
C | T | A | T | 14 | 是Yes | ||
A | T | F | I | 12 | 是Yes | ||
C | T | M | I | 1 | 否No |
Table 3 Nonsynonymous SNP of cultivated soybean SWEET genes
基因ID Gene ID | SNP个数 SNP number | Ref变异a Ref allele | Alt变异b Alt allele | Ref氨基酸c Ref amino acid | Alt氨基酸d Alt amino acid | 突变氨基酸 所在位置 Mutant amino acid position | 是否位于 保守域e In conserved domain or not |
---|---|---|---|---|---|---|---|
A | T | N | I | 235 | 否No | ||
T | C | S | P | 249 | 否No | ||
Glyma.18G301200 | 3 | C | A | C | F | 269 | 否No |
T | A | E | D | 223 | 否No | ||
T | A | H | L | 6 | 否No | ||
Glyma.19G009800 | 2 | G | A | L | F | 107 | 否No |
A | C | F | L | 20 | 是Yes | ||
Glyma.19G009900 | 1 | C | G | K | N | 218 | 是Yes |
Glyma.19G232200 | 1 | A | T | K | * | 37 | 是Yes |
Glyma.20G066500 | 1 | C | T | W | * | 34 | 是Yes |
Glyma.20G082700 | 18 | C | T | G | R | 178 | 否No |
C | T | E | K | 167 | 否No | ||
T | C | R | G | 162 | 否No | ||
C | T | V | I | 161 | 否No | ||
C | T | G | D | 157 | 否No | ||
G | A | L | F | 146 | 否No | ||
G | A | P | L | 145 | 否No | ||
C | A/T | A | S/T | 120 | 否No | ||
G | C | Q | E | 118 | 否No | ||
G | A | A | V | 111 | 否No | ||
A | G | V | A | 107 | 否No | ||
C | A | A | S | 90 | 是Yes | ||
C | T | W | * | 55 | 是Yes | ||
C | T | G | R | 35 | 是Yes | ||
A | G | F | L | 28 | 是Yes | ||
C | T | A | T | 14 | 是Yes | ||
A | T | F | I | 12 | 是Yes | ||
C | T | M | I | 1 | 否No |
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